Is it any wonder the machines think our logic is flawed and we need to be exterminated?

we got past the Crusades, the Spanish Inquisition, the Holocaust/WWII and every other horrific event/war in history. We're still here. I think humans, despite the many ignorant ones, will continue on this planet for quite some time. Our species is strong; our intelligence grows with every generation, though it may not seem that way. The irrational thinking, illogical decisions and overall "dysfunction" will always be a part of our existence. But take a closer look at history and tell me we're not making progress.